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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("StarBioTrek")
In most cases, you don't need to download the package archive at all.
StarBioTrek
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StarBioTrek
Bioconductor version: Release (3.4)
This tool StarBioTrek presents some methodologies to measure pathway activity and cross-talk among pathways integrating also the information of network data.
Author: Claudia Cava, Isabella Castiglioni
Maintainer: Claudia Cava <claudia.cava at ibfm.cnr.it>
Citation (from within R,
enter citation("StarBioTrek")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("StarBioTrek")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("StarBioTrek")
| R Script | StarBioTrek:Application Examples | |
| HTML | R Script | Vignette Title |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GeneRegulation, KEGG, Network, Pathways, Software |
| Version | 1.0.3 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | GPL (>= 3) |
| Depends | R (>= 3.3) |
| Imports | SpidermiR, KEGGREST, org.Hs.eg.db, AnnotationDbi, e1071, ROCR, grDevices, igraph |
| LinkingTo | |
| Suggests | BiocStyle, knitr, rmarkdown, testthat, devtools, roxygen2, qgraph, png, grid |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/claudiacava/StarBioTrek |
| BugReports | https://github.com/claudiacava/StarBioTrek/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | StarBioTrek_1.0.3.tar.gz |
| Windows Binary | StarBioTrek_1.0.3.zip |
| Mac OS X 10.9 (Mavericks) | StarBioTrek_1.0.3.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/StarBioTrek/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/StarBioTrek/ |
| Package Downloads Report | Download Stats |
Documentation »
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