To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("goseq")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.3)
Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data
Author: Matthew Young
Maintainer: Nadia Davidson <nadia.davidson at mcri.edu.au>, Anthony Hawkins <anthony.hawkins at mcri.edu.au>
Citation (from within R,
enter citation("goseq")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("goseq")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("goseq")
R Script | goseq User's Guide | |
Reference Manual |
biocViews | GO, GeneExpression, RNASeq, Sequencing, Software, Transcription |
Version | 1.24.0 |
In Bioconductor since | BioC 2.6 (R-2.11) (6.5 years) |
License | LGPL (>= 2) |
Depends | R (>= 2.11.0), BiasedUrn, geneLenDataBase |
Imports | mgcv, graphics, stats, utils, AnnotationDbi, GO.db, BiocGenerics |
LinkingTo | |
Suggests | edgeR, org.Hs.eg.db, rtracklayer |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | rgsepd |
Imports Me | SMITE |
Suggests Me | oneChannelGUI |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | goseq_1.24.0.tar.gz |
Windows Binary | goseq_1.24.0.zip |
Mac OS X 10.9 (Mavericks) | goseq_1.24.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/goseq/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/goseq/ |
Package Downloads Report | Download Stats |
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