LRcellTypeMarkers
This is the development version of LRcellTypeMarkers; for the stable release version, see LRcellTypeMarkers.
Marker gene information for LRcell R Bioconductor package
Bioconductor version: Development (3.21)
This is an external ExperimentData package for LRcell. This data package contains the gene enrichment scores calculated from scRNA-seq dataset which indicates the gene enrichment of each cell type in certain brain region. LRcell package is used to identify specific sub-cell types that drives the changes observed in a bulk RNA-seq differential gene expression experiment. For more details, please visit: https://github.com/marvinquiet/LRcell.
Author: Wenjing Ma [cre, aut] (ORCID:
Maintainer: Wenjing Ma <wenjing.ma at emory.edu>
citation("LRcellTypeMarkers")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("LRcellTypeMarkers")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("LRcellTypeMarkers")| LRcellTypeMarkers: Marker gene information for LRcell R Bioconductor package using Bioconductor's ExperimentHub | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, PackageTypeData, RNASeqData, SingleCellData |
| Version | 1.15.0 |
| License | MIT + file LICENSE |
| Depends | R (>= 4.1) |
| Imports | ExperimentHub |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/marvinquiet/LRcellTypeMarkers/issues |
See More
| Suggests | LRcell, BiocStyle, knitr, rmarkdown, roxygen2, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | LRcell |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | LRcellTypeMarkers_1.15.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/LRcellTypeMarkers |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/LRcellTypeMarkers |
| Package Short Url | https://bioconductor.org/packages/LRcellTypeMarkers/ |
| Package Downloads Report | Download Stats |