rmelting

This is the development version of rmelting; for the stable release version, see rmelting.

R Interface to MELTING 5

Bioconductor version: Development (3.21)

R interface to the MELTING 5 program (https://www.ebi.ac.uk/biomodels/tools/melting/) to compute melting temperatures of nucleic acid duplexes along with other thermodynamic parameters.

Author: J. Aravind [aut, cre] (ORCID: ), G. K. Krishna [aut], Bob Rudis [ctb] (melting5jars), Nicolas Le Novère [ctb] (MELTING 5 Java Library), Marine Dumousseau [ctb] (MELTING 5 Java Library), William John Gowers [ctb] (MELTING 5 Java Library)

Maintainer: J. Aravind <j.aravind at icar.gov.in>

Citation (from within R, enter citation("rmelting")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rmelting")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rmelting")

Tutorial	PDF
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BiomedicalInformatics, Cheminformatics, Software
Version	1.23.0
In Bioconductor since	BioC 3.9 (R-3.6) (5.5 years)
License	GPL-2 \| GPL-3
Depends	R (>= 3.6)
Imports	Rdpack, rJava (>= 0.9-8)
System Requirements	Java
URL	https://github.com/aravind-j/rmelting https://aravind-j.github.io/rmelting/
Bug Reports	https://github.com/aravind-j/rmelting/issues

Suggests	readxl, knitr, rmarkdown, reshape2, pander, testthat
Linking To
Enhances
Depends On Me
Imports Me
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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rmelting_1.23.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/rmelting
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rmelting
Bioc Package Browser	https://code.bioconductor.org/browse/rmelting/
Package Short Url	https://bioconductor.org/packages/rmelting/
Package Downloads Report	Download Stats