alabaster.sfe
This is the development version of alabaster.sfe; to use it, please install the devel version of Bioconductor.
Language agnostic on disk serialization of SpatialFeatureExperiment
Bioconductor version: Development (3.21)
Builds upon the existing ArtifactDB project, expending alabaster.spatial for language agnostic on disk serialization of SpatialFeatureExperiment.
Author: Lambda Moses [aut, cre] (ORCID:
Maintainer: Lambda Moses <dl3764 at columbia.edu>
citation("alabaster.sfe")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("alabaster.sfe")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("alabaster.sfe")| Overview | HTML | R Script |
| Reference Manual |
Details
| biocViews | DataRepresentation, Software, Spatial |
| Version | 0.99.4 |
| In Bioconductor since | BioC 3.21 (R-4.5) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.1.0), SpatialFeatureExperiment(>= 1.9.3), alabaster.base |
| Imports | alabaster.sce, alabaster.spatial(>= 1.5.2), EBImage, jsonlite, methods, RBioFormats, S4Vectors, sfarrow, SingleCellExperiment, spatialreg, spdep, SummarizedExperiment, terra, xml2 |
| System Requirements | |
| URL | https://pachterlab.github.io/alabaster.sfe/ |
| Bug Reports | https://github.com/pachterlab/alabaster.sfe/issues |
See More
| Suggests | BiocStyle, fs, knitr, rmarkdown, scater, sf, SFEData, testthat (>= 3.0.0), Voyager(>= 1.9.1) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | alabaster.sfe_0.99.4.tar.gz |
| Windows Binary (x86_64) | alabaster.sfe_0.99.4.zip |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/alabaster.sfe |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/alabaster.sfe |
| Bioc Package Browser | https://code.bioconductor.org/browse/alabaster.sfe/ |
| Package Short Url | https://bioconductor.org/packages/alabaster.sfe/ |
| Package Downloads Report | Download Stats |