XAItest
This is the development version of XAItest; to use it, please install the devel version of Bioconductor.
XAItest: Enhancing Feature Discovery with eXplainable AI
Bioconductor version: Development (3.21)
XAItest is an R Package that identifies features using eXplainable AI (XAI) methods such as SHAP or LIME. This package allows users to compare these methods with traditional statistical tests like t-tests, empirical Bayes, and Fisher's test. Additionally, it includes a system that enables the comparison of feature importance with p-values by incorporating calibrated simulated data.
Author: Ghislain FIEVET [aut, cre] (ORCID:
Maintainer: Ghislain FIEVET <ghislain.fievet at gmail.com>
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("XAItest")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Classification, FeatureExtraction, Regression, Software, StatisticalMethod |
| Version | 0.99.24 |
| In Bioconductor since | BioC 3.21 (R-4.5) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | limma, randomForest, kernelshap, caret, lime, DT, methods, SummarizedExperiment, ggplot2 |
| System Requirements | |
| URL | https://github.com/GhislainFievet/XAItest |
| Bug Reports | https://github.com/GhislainFievet/XAItest/issues |
See More
| Suggests | knitr, ggforce, shapr (>= 0.2.2), airway, xgboost, BiocGenerics, RUnit, S4Vectors |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/XAItest |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/XAItest |
| Package Short Url | https://bioconductor.org/packages/XAItest/ |
| Package Downloads Report | Download Stats |