HuBMAPR
This is the development version of HuBMAPR; for the stable release version, see HuBMAPR.
Interface to 'HuBMAP'
Bioconductor version: Development (3.21)
'HuBMAP' provides an open, global bio-molecular atlas of the human body at the cellular level. The `datasets()`, `samples()`, `donors()`, `publications()`, and `collections()` functions retrieves the information for each of these entity types. `*_details()` are available for individual entries of each entity type. `*_derived()` are available for retrieving derived datasets or samples for individual entries of each entity type. Data files can be accessed using `bulk_data_transfer()`.
Author: Christine Hou [aut, cre] (ORCID:
Maintainer: Christine Hou <chris2018hou at gmail.com>
citation("HuBMAPR")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("HuBMAPR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HuBMAPR")| Accessing Human Cell Atlas Data | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Infrastructure, SingleCell, Software, Spatial, ThirdPartyClient |
| Version | 1.1.4 |
| In Bioconductor since | BioC 3.20 (R-4.4) (< 6 months) |
| License | Artistic-2.0 |
| Depends | R (>= 4.4.0) |
| Imports | httr2, dplyr, tidyr, tibble, rjsoncons, rlang, utils, stringr, whisker, purrr |
| System Requirements | |
| URL | https://christinehou11.github.io/HuBMAPR/ https://github.com/christinehou11/HuBMAPR |
| Bug Reports | https://github.com/christinehou11/HuBMAPR/issues |
See More
| Suggests | testthat (>= 3.0.0), knitr, ggplot2, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | HuBMAPR_1.1.4.tar.gz |
| Windows Binary (x86_64) | HuBMAPR_1.1.4.zip (64-bit only) |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/HuBMAPR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HuBMAPR |
| Bioc Package Browser | https://code.bioconductor.org/browse/HuBMAPR/ |
| Package Short Url | https://bioconductor.org/packages/HuBMAPR/ |
| Package Downloads Report | Download Stats |