DNAcycP2
This is the development version of DNAcycP2; to use it, please install the devel version of Bioconductor.
DNA Cyclizability Prediction
Bioconductor version: Development (3.21)
This package performs prediction of intrinsic cyclizability of of every 50-bp subsequence in a DNA sequence. The input could be a file either in FASTA or text format. The output will be the C-score, the estimated intrinsic cyclizability score for each 50 bp sequences in each entry of the sequence set.
Author: Ji-Ping Wang [aut, cre] (ORCID:
Maintainer: Ji-Ping Wang <jzwang at northwestern.edu>
citation("DNAcycP2")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("DNAcycP2")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DNAcycP2")| DNAcycP2 | HTML | R Script |
| Reference Manual |
Details
| biocViews | NeuralNetwork, Software, StructuralPrediction |
| Version | 0.99.4 |
| In Bioconductor since | BioC 3.21 (R-4.5) |
| License | Artistic-2.0 |
| Depends | R (>= 4.4.0) |
| Imports | basilisk, reticulate |
| System Requirements | |
| URL | https://github.com/jipingw/DNAcycP2 |
| Bug Reports | https://github.com/jipingw/DNAcycP2 |
See More
| Suggests | knitr, rmarkdown, BiocGenerics, RUnit, tinytest, BiocStyle, Biostrings |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DNAcycP2_0.99.4.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | DNAcycP2_0.99.4.tgz |
| macOS Binary (arm64) | DNAcycP2_0.99.4.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DNAcycP2 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DNAcycP2 |
| Bioc Package Browser | https://code.bioconductor.org/browse/DNAcycP2/ |
| Package Short Url | https://bioconductor.org/packages/DNAcycP2/ |
| Package Downloads Report | Download Stats |