pogos
This is the development version of pogos; for the stable release version, see pogos.
PharmacOGenomics Ontology Support
Bioconductor version: Development (3.20)
Provide simple utilities for querying bhklab PharmacoDB, modeling API outputs, and integrating to cell and compound ontologies.
Author: Vince Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("pogos")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("pogos")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pogos")
pogos -- simple interface to bhklab PharmacoDB with emphasis on ontology | HTML | R Script |
Reference Manual |
Details
biocViews | ImmunoOncology, Pharmacogenomics, PooledScreens, Software |
Version | 1.25.0 |
In Bioconductor since | BioC 3.7 (R-3.5) (6.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.5.0), rjson (>= 0.2.15), httr (>= 1.3.1) |
Imports | methods, S4Vectors, utils, shiny, ontoProc, ggplot2, graphics |
System Requirements | |
URL |
See More
Suggests | knitr, DT, ontologyPlot, testthat, rmarkdown, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | pogos_1.25.0.tar.gz |
Windows Binary | pogos_1.25.0.zip |
macOS Binary (x86_64) | pogos_1.25.0.tgz |
macOS Binary (arm64) | pogos_1.25.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/pogos |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pogos |
Bioc Package Browser | https://code.bioconductor.org/browse/pogos/ |
Package Short Url | https://bioconductor.org/packages/pogos/ |
Package Downloads Report | Download Stats |