goSorensen
This is the development version of goSorensen; for the stable release version, see goSorensen.
Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)
Bioconductor version: Development (3.20)
This package implements inferential methods to compare gene lists in terms of their biological meaning as expressed in the GO. The compared gene lists are characterized by cross-tabulation frequency tables of enriched GO items. Dissimilarity between gene lists is evaluated using the Sorensen-Dice index. The fundamental guiding principle is that two gene lists are taken as similar if they share a great proportion of common enriched GO items.
Author: Pablo Flores [aut, cre] , Jordi Ocana [aut, ctb] (0000-0002-4736-699), Alexandre Sanchez-Pla [ctb]
, Miquel Salicru [ctb]
Maintainer: Pablo Flores <p_flores at espoch.edu.ec>
citation("goSorensen")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("goSorensen")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("goSorensen")
An introduction to equivalence test between feature lists using goSorensen. | HTML | R Script |
An Irrelevance Threshold Matrix of Dissimilarities. | HTML | R Script |
README | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Annotation, Clustering, GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Microarray, MultipleComparison, Pathways, Reactome, Software |
Version | 1.7.1 |
In Bioconductor since | BioC 3.16 (R-4.2) (2 years) |
License | GPL-3 |
Depends | R (>= 4.3) |
Imports | clusterProfiler, goProfiles, org.Hs.eg.db, parallel, stats, stringr |
System Requirements | |
URL |
See More
Suggests | BiocManager, BiocStyle, knitr, rmarkdown, org.At.tair.db, org.Ag.eg.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcSakai.eg.db, org.EcK12.eg.db, org.Gg.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Ss.eg.db, org.Pt.eg.db, org.Xl.eg.db |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
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Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | goSorensen_1.7.1.tar.gz |
Windows Binary | goSorensen_1.7.1.zip |
macOS Binary (x86_64) | goSorensen_1.7.1.tgz |
macOS Binary (arm64) | goSorensen_1.7.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/goSorensen |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/goSorensen |
Bioc Package Browser | https://code.bioconductor.org/browse/goSorensen/ |
Package Short Url | https://bioconductor.org/packages/goSorensen/ |
Package Downloads Report | Download Stats |