An ExperimentHub package for accessing processed RLSuite data sets

Bioconductor version: Release (3.19)

| RLHub provides a convenient interface to the processed data provided within RLSuite, a tool-chain for analyzing R-loop-mapping data sets. The primary purpose of RLHub is to serve the processed data sets required by the RLSeq R package and the RLBase web service. Additionally, RLHub provides a stand-alone R interface to these data, benefiting users who are addressing questions related to R-loop regions (RL-Regions), R-loop-binding proteins (RLBPs), R-loop co-localizing factors, and the differences between R-loop-mapping methods. The full data-generating protocol is found here: https://github.com/Bishop-Laboratory/RLBase-data.

Author: Henry Miller [aut, cre, cph] , Alexander Bishop [ths, cph]

Maintainer: Henry Miller <millerh1 at uthscsa.edu>

Citation (from within R, enter citation("RLHub")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Accessing RLHub Data HTML R Script
Reference Manual PDF


biocViews ChIPSeqData, DNASeqData, ENCODE, ExperimentData, ExperimentHub, ExpressionData, GEO, Genome, PackageTypeData, RNASeqData, ReproducibleResearch, SequencingData
Version 1.9.0
License MIT + file LICENSE
Imports AnnotationHub, ExperimentHub, utils
System Requirements
URL https://github.com/Bishop-Laboratory/RLHub https://bishop-laboratory.github.io/RLHub/
Bug Reports https://github.com/Bishop-Laboratory/RLHub/issues
See More
Suggests knitr, DT, rmarkdown, testthat, BiocStyle
Linking To
Depends On Me
Imports Me RLSeq
Suggests Me
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RLHub_1.9.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/RLHub
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RLHub
Package Short Url https://bioconductor.org/packages/RLHub/
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