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sparseMatrixStats

This is the development version of sparseMatrixStats; for the stable release version, see sparseMatrixStats.

Summary Statistics for Rows and Columns of Sparse Matrices


Bioconductor version: Development (3.19)

High performance functions for row and column operations on sparse matrices. For example: col / rowMeans2, col / rowMedians, col / rowVars etc. Currently, the optimizations are limited to data in the column sparse format. This package is inspired by the matrixStats package by Henrik Bengtsson.

Author: Constantin Ahlmann-Eltze [aut, cre]

Maintainer: Constantin Ahlmann-Eltze <artjom31415 at googlemail.com>

Citation (from within R, enter citation("sparseMatrixStats")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("sparseMatrixStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sparseMatrixStats")
sparseMatrixStats HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.15.0
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License MIT + file LICENSE
Depends MatrixGenerics(>= 1.5.3)
Imports Rcpp, Matrix, matrixStats (>= 0.60.0), methods
System Requirements C++11
URL https://github.com/const-ae/sparseMatrixStats
Bug Reports https://github.com/const-ae/sparseMatrixStats/issues
See More
Suggests testthat (>= 2.1.0), knitr, bench, rmarkdown, BiocStyle
Linking To Rcpp
Enhances
Depends On Me
Imports Me atena, DelayedMatrixStats, dreamlet, GSVA, SimBu, smartid, smoothclust, SPOTlight
Suggests Me MatrixGenerics, scPCA, zinbwave
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sparseMatrixStats_1.15.0.tar.gz
Windows Binary sparseMatrixStats_1.15.0.zip
macOS Binary (x86_64) sparseMatrixStats_1.15.0.tgz
macOS Binary (arm64) sparseMatrixStats_1.15.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/sparseMatrixStats
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sparseMatrixStats
Bioc Package Browser https://code.bioconductor.org/browse/sparseMatrixStats/
Package Short Url https://bioconductor.org/packages/sparseMatrixStats/
Package Downloads Report Download Stats