scTHI
Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing data
Bioconductor version: Release (3.19)
scTHI is an R package to identify active pairs of ligand-receptors from single cells in order to study,among others, tumor-host interactions. scTHI contains a set of signatures to classify cells from the tumor microenvironment.
Author: Francesca Pia Caruso [aut], Michele Ceccarelli [aut, cre]
Maintainer: Michele Ceccarelli <m.ceccarelli at gmail.com>
citation("scTHI")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scTHI")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scTHI")
Using scTHI | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | SingleCell, Software |
Version | 1.16.0 |
In Bioconductor since | BioC 3.11 (R-4.0) (4.5 years) |
License | GPL-2 |
Depends | R (>= 4.0) |
Imports | BiocParallel, Rtsne, grDevices, graphics, stats |
System Requirements | |
URL | |
Bug Reports | https://github.com/miccec/scTHI/issues |
See More
Suggests | scTHI.data, knitr, rmarkdown, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | scTHI_1.16.0.tar.gz |
Windows Binary | scTHI_1.16.0.zip |
macOS Binary (x86_64) | scTHI_1.16.0.tgz |
macOS Binary (arm64) | scTHI_1.16.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/scTHI |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scTHI |
Bioc Package Browser | https://code.bioconductor.org/browse/scTHI/ |
Package Short Url | https://bioconductor.org/packages/scTHI/ |
Package Downloads Report | Download Stats |