Registration and Call for Abstracts Open for Bioc2024

rawrr

This is the development version of rawrr; for the stable release version, see rawrr.

Direct Access to Orbitrap Data and Beyond


Bioconductor version: Development (3.19)

This package wraps the functionality of the RawFileReader .NET assembly. Within the R environment, spectra and chromatograms are represented by S3 objects. The package provides basic functions to download and install the required third-party libraries. The package is developed, tested, and used at the Functional Genomics Center Zurich, Switzerland.

Author: Christian Panse [aut, cre] , Tobias Kockmann [aut]

Maintainer: Christian Panse <cp at fgcz.ethz.ch>

Citation (from within R, enter citation("rawrr")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rawrr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rawrr")
Direct Access to Orbitrap Data and Beyond HTML R Script
Reference Manual PDF
NEWS Text
INSTALL Text

Details

biocViews Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software
Version 1.11.14
In Bioconductor since BioC 3.13 (R-4.1) (3 years)
License GPL-3
Depends R (>= 4.1)
Imports grDevices, graphics, stats, utils
System Requirements mono-runtime 4.x or higher (including System.Data library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft Windows.
URL https://github.com/fgcz/rawrr/
Bug Reports https://github.com/fgcz/rawrr/issues
See More
Suggests BiocStyle(>= 2.5), ExperimentHub, knitr, protViz (>= 0.7), rmarkdown, tartare(>= 1.5), testthat
Linking To
Enhances
Depends On Me
Imports Me MsBackendRawFileReader, rawDiag
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rawrr_1.11.14.tar.gz
Windows Binary rawrr_1.11.14.zip
macOS Binary (x86_64) rawrr_1.11.14.tgz
macOS Binary (arm64) rawrr_1.11.9.tgz
Source Repository git clone https://git.bioconductor.org/packages/rawrr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rawrr
Bioc Package Browser https://code.bioconductor.org/browse/rawrr/
Package Short Url https://bioconductor.org/packages/rawrr/
Package Downloads Report Download Stats