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This is the development version of rTRM; for the stable release version, see rTRM.

Identification of Transcriptional Regulatory Modules from Protein-Protein Interaction Networks

Bioconductor version: Development (3.19)

rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at>

Citation (from within R, enter citation("rTRM")):


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if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


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Introduction to rTRM HTML R Script
Reference Manual PDF


biocViews GeneRegulation, GraphAndNetwork, Network, Software, Transcription
Version 1.41.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL-3
Depends R (>= 2.10), igraph (>= 1.0)
Imports methods, AnnotationDbi, DBI, RSQLite
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Suggests RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt, Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked,,, ggplot2, BiocStyle, knitr, rmarkdown
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Imports Me rTRMui
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Source Package rTRM_1.41.0.tar.gz
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