microbiome
Microbiome Analytics
Bioconductor version: Release (3.19)
Utilities for microbiome analysis.
Author: Leo Lahti [aut, cre] , Sudarshan Shetty [aut]
Maintainer: Leo Lahti <leo.lahti at iki.fi>
Citation (from within R, enter
citation("microbiome")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("microbiome")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("microbiome")
microbiome R package | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | Metagenomics, Microbiome, Sequencing, Software, SystemsBiology |
Version | 1.26.0 |
In Bioconductor since | BioC 3.6 (R-3.4) (7 years) |
License | BSD_2_clause + file LICENSE |
Depends | R (>= 3.6.0), phyloseq, ggplot2 |
Imports | Biostrings, compositions, dplyr, reshape2, Rtsne, scales, stats, tibble, tidyr, utils, vegan |
System Requirements | |
URL | http://microbiome.github.io/microbiome |
Bug Reports | https://github.com/microbiome/microbiome/issues |
See More
Suggests | BiocGenerics, BiocStyle, Cairo, knitr, rmarkdown, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | MicrobiomeSurv |
Suggests Me | ANCOMBC, dar |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | microbiome_1.26.0.tar.gz |
Windows Binary | microbiome_1.26.0.zip |
macOS Binary (x86_64) | microbiome_1.26.0.tgz |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/microbiome |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/microbiome |
Bioc Package Browser | https://code.bioconductor.org/browse/microbiome/ |
Package Short Url | https://bioconductor.org/packages/microbiome/ |
Package Downloads Report | Download Stats |