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keggorthology

This is the development version of keggorthology; for the stable release version, see keggorthology.

graph support for KO, KEGG Orthology


Bioconductor version: Development (3.19)

graphical representation of the Feb 2010 KEGG Orthology. The KEGG orthology is a set of pathway IDs that are not to be confused with the KEGG ortholog IDs.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("keggorthology")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("keggorthology")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("keggorthology")
keggorthology overview PDF R Script
Reference Manual PDF

Details

biocViews GraphAndNetwork, KEGG, Pathways, Software, Visualization
Version 2.55.0
In Bioconductor since BioC 2.6 (R-2.11) (14 years)
License Artistic-2.0
Depends R (>= 2.5.0), stats, graph, hgu95av2.db
Imports AnnotationDbi, graph, DBI, graph, grDevices, methods, stats, tools, utils
System Requirements
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Suggests RBGL, ALL
Linking To
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Imports Me
Suggests Me MLInterfaces
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package keggorthology_2.55.0.tar.gz
Windows Binary keggorthology_2.55.0.zip
macOS Binary (x86_64) keggorthology_2.55.0.tgz
macOS Binary (arm64) keggorthology_2.55.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/keggorthology
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/keggorthology
Bioc Package Browser https://code.bioconductor.org/browse/keggorthology/
Package Short Url https://bioconductor.org/packages/keggorthology/
Package Downloads Report Download Stats