iCNV
Integrated Copy Number Variation detection
Bioconductor version: Release (3.19)
Integrative copy number variation (CNV) detection from multiple platform and experimental design.
Author: Zilu Zhou, Nancy Zhang
Maintainer: Zilu Zhou <zhouzilu at pennmedicine.upenn.edu>
Citation (from within R, enter
citation("iCNV")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iCNV")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iCNV")
iCNV Vignette | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | CopyNumberVariation, ExomeSeq, HiddenMarkovModel, ImmunoOncology, SNP, Software, WholeGenome |
Version | 1.24.0 |
In Bioconductor since | BioC 3.7 (R-3.5) (6.5 years) |
License | GPL-2 |
Depends | R (>= 3.3.1), CODEX |
Imports | fields, ggplot2, truncnorm, tidyr, data.table, dplyr, grDevices, graphics, stats, utils, rlang |
System Requirements | |
URL |
See More
Suggests | knitr, rmarkdown, WES.1KG.WUGSC |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | iCNV_1.24.0.tar.gz |
Windows Binary | iCNV_1.24.0.zip |
macOS Binary (x86_64) | iCNV_1.24.0.tgz |
macOS Binary (arm64) | iCNV_1.24.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/iCNV |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iCNV |
Bioc Package Browser | https://code.bioconductor.org/browse/iCNV/ |
Package Short Url | https://bioconductor.org/packages/iCNV/ |
Package Downloads Report | Download Stats |