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This is the development version of hiReadsProcessor; for the stable release version, see hiReadsProcessor.

Functions to process LM-PCR reads from 454/Illumina data

Bioconductor version: Development (3.19)

hiReadsProcessor contains set of functions which allow users to process LM-PCR products sequenced using any platform. Given an excel/txt file containing parameters for demultiplexing and sample metadata, the functions automate trimming of adaptors and identification of the genomic product. Genomic products are further processed for QC and abundance quantification.

Author: Nirav V Malani <malnirav at>

Maintainer: Nirav V Malani <malnirav at>

Citation (from within R, enter citation("hiReadsProcessor")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual PDF


biocViews Preprocessing, Sequencing, Software
Version 1.39.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL-3
Depends Biostrings, GenomicAlignments, BiocParallel, hiAnnotator, R (>= 3.0)
Imports sonicLength, dplyr, BiocGenerics, GenomicRanges, readxl, methods
System Requirements BLAT, UCSC hg18 in 2bit format for BLAT
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