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fdrame

This is the development version of fdrame; for the stable release version, see fdrame.

FDR adjustments of Microarray Experiments (FDR-AME)


Bioconductor version: Development (3.19)

This package contains two main functions. The first is fdr.ma which takes normalized expression data array, experimental design and computes adjusted p-values It returns the fdr adjusted p-values and plots, according to the methods described in (Reiner, Yekutieli and Benjamini 2002). The second, is fdr.gui() which creates a simple graphic user interface to access fdr.ma

Author: Yoav Benjamini, Effi Kenigsberg, Anat Reiner, Daniel Yekutieli

Maintainer: Effi Kenigsberg <effiken.fdrame at gmail.com>

Citation (from within R, enter citation("fdrame")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("fdrame")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fdrame")
Annotation Overview PDF
Reference Manual PDF

Details

biocViews DifferentialExpression, Microarray, MultipleComparison, Software
Version 1.75.0
In Bioconductor since BioC 1.7 (R-2.2) (18.5 years)
License GPL (>= 2)
Depends
Imports tcltk, graphics, grDevices, stats, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package fdrame_1.75.0.tar.gz
Windows Binary fdrame_1.75.0.zip (64-bit only)
macOS Binary (x86_64) fdrame_1.75.0.tgz
macOS Binary (arm64) fdrame_1.75.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/fdrame
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/fdrame
Bioc Package Browser https://code.bioconductor.org/browse/fdrame/
Package Short Url https://bioconductor.org/packages/fdrame/
Package Downloads Report Download Stats