aCGH
Classes and functions for Array Comparative Genomic Hybridization data
Bioconductor version: Release (3.19)
Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.
Author: Jane Fridlyand <jfridlyand at cc.ucsf.edu>, Peter Dimitrov <dimitrov at stat.Berkeley.EDU>
Maintainer: Peter Dimitrov <dimitrov at stat.Berkeley.EDU>
citation("aCGH")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("aCGH")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("aCGH")
aCGH Overview | R Script | |
Reference Manual |
Details
biocViews | CopyNumberVariation, DataImport, Genetics, Software |
Version | 1.82.0 |
In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19.5 years) |
License | GPL-2 |
Depends | R (>= 2.10), cluster, survival, multtest |
Imports | Biobase, grDevices, graphics, methods, stats, splines, utils |
System Requirements | |
URL |
See More
Suggests | |
Linking To | |
Enhances | |
Depends On Me | CRImage |
Imports Me | ADaCGH2 |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | aCGH_1.82.0.tar.gz |
Windows Binary | aCGH_1.82.0.zip (64-bit only) |
macOS Binary (x86_64) | aCGH_1.82.0.tgz |
macOS Binary (arm64) | aCGH_1.82.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/aCGH |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/aCGH |
Bioc Package Browser | https://code.bioconductor.org/browse/aCGH/ |
Package Short Url | https://bioconductor.org/packages/aCGH/ |
Package Downloads Report | Download Stats |