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TargetSearch

This is the development version of TargetSearch; for the stable release version, see TargetSearch.

A package for the analysis of GC-MS metabolite profiling data


Bioconductor version: Development (3.19)

This packages provides a flexible, fast and accurate method for targeted pre-processing of GC-MS data. The user provides a (often very large) set of GC chromatograms and a metabolite library of targets. The package will automatically search those targets in the chromatograms resulting in a data matrix that can be used for further data analysis.

Author: Alvaro Cuadros-Inostroza [aut, cre], Jan Lisec [aut], Henning Redestig [aut], Matt Hannah [aut]

Maintainer: Alvaro Cuadros-Inostroza <acuadros+bioc at gmail.com>

Citation (from within R, enter citation("TargetSearch")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TargetSearch")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TargetSearch")
RI correction extra PDF R Script
The TargetSearch Package PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DecisionTree, ImmunoOncology, MassSpectrometry, Preprocessing, Software
Version 2.5.3
In Bioconductor since BioC 2.4 (R-2.9) (15 years)
License GPL (>= 2)
Depends
Imports graphics, grDevices, methods, ncdf4, stats, utils, assertthat
System Requirements
URL https://github.com/acinostroza/TargetSearch
Bug Reports https://github.com/acinostroza/TargetSearch/issues
See More
Suggests TargetSearchData, BiocStyle, knitr, tinytest
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TargetSearch_2.5.3.tar.gz
Windows Binary TargetSearch_2.5.3.zip
macOS Binary (x86_64) TargetSearch_2.5.3.tgz
macOS Binary (arm64) TargetSearch_2.5.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/TargetSearch
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TargetSearch
Bioc Package Browser https://code.bioconductor.org/browse/TargetSearch/
Package Short Url https://bioconductor.org/packages/TargetSearch/
Package Downloads Report Download Stats