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StarBioTrek

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of StarBioTrek; for the stable release version, see StarBioTrek.

StarBioTrek


Bioconductor version: Development (3.19)

This tool StarBioTrek presents some methodologies to measure pathway activity and cross-talk among pathways integrating also the information of network data.

Author: Claudia Cava, Isabella Castiglioni

Maintainer: Claudia Cava <claudia.cava at ibfm.cnr.it>

Citation (from within R, enter citation("StarBioTrek")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("StarBioTrek")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("StarBioTrek")
Vignette Title HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GeneRegulation, KEGG, Network, Pathways, Software
Version 1.29.1
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License GPL (>= 3)
Depends R (>= 3.3)
Imports SpidermiR, graphite, AnnotationDbi, e1071, ROCR, MLmetrics, grDevices, igraph, reshape2, ggplot2
System Requirements
URL https://github.com/claudiacava/StarBioTrek
Bug Reports https://github.com/claudiacava/StarBioTrek/issues
See More
Suggests BiocStyle, knitr, rmarkdown, testthat, devtools, roxygen2, qgraph, png, grid
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package StarBioTrek_1.29.1.tar.gz
Windows Binary StarBioTrek_1.29.1.zip
macOS Binary (x86_64) StarBioTrek_1.29.1.tgz
macOS Binary (arm64) StarBioTrek_1.29.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/StarBioTrek
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/StarBioTrek
Package Short Url https://bioconductor.org/packages/StarBioTrek/
Package Downloads Report Download Stats