RUVcorr
Removal of unwanted variation for gene-gene correlations and related analysis
Bioconductor version: Release (3.19)
RUVcorr allows to apply global removal of unwanted variation (ridged version of RUV) to real and simulated gene expression data.
Author: Saskia Freytag
Maintainer: Saskia Freytag <saskia.freytag at perkins.uwa.edu.au>
Citation (from within R, enter
citation("RUVcorr")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RUVcorr")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RUVcorr")
Vignette | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | GeneExpression, Normalization, Software |
Version | 1.36.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (9.5 years) |
License | GPL-2 |
Depends | |
Imports | corrplot, MASS, stats, lattice, grDevices, gridExtra, snowfall, psych, BiocParallel, grid, bladderbatch, reshape2, graphics |
System Requirements | |
URL |
See More
Suggests | knitr, hgu133a2.db, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | RUVcorr_1.36.0.tar.gz |
Windows Binary | RUVcorr_1.36.0.zip |
macOS Binary (x86_64) | RUVcorr_1.36.0.tgz |
macOS Binary (arm64) | RUVcorr_1.36.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/RUVcorr |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RUVcorr |
Bioc Package Browser | https://code.bioconductor.org/browse/RUVcorr/ |
Package Short Url | https://bioconductor.org/packages/RUVcorr/ |
Package Downloads Report | Download Stats |