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MACSQuantifyR

This is the development version of MACSQuantifyR; for the stable release version, see MACSQuantifyR.

Fast treatment of MACSQuantify FACS data


Bioconductor version: Development (3.19)

Automatically process the metadata of MACSQuantify FACS sorter. It runs multiple modules: i) imports of raw file and graphical selection of duplicates in well plate, ii) computes statistics on data and iii) can compute combination index.

Author: Raphaël Bonnet [aut, cre], Marielle Nebout [dtc],Giulia Biondani [dtc], Jean-François Peyron[aut,ths], Inserm [fnd]

Maintainer: Raphaël Bonnet <raphael.bonnet at univ-cotedazur.fr>

Citation (from within R, enter citation("MACSQuantifyR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MACSQuantifyR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MACSQuantifyR")
MACSQuantifyR_quick_introduction HTML R Script
MACSQuantifyR_simple_pipeline HTML R Script
MACSQuantifyR_step_by_step_analysis HTML R Script
Reference Manual PDF

Details

biocViews DataImport, DataRepresentation, FlowCytometry, GUI, Normalization, Preprocessing, Software
Version 1.17.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License Artistic-2.0
Depends
Imports readxl, graphics, tools, utils, grDevices, ggplot2, ggrepel, methods, stats, latticeExtra, lattice, rmarkdown, png, grid, gridExtra, prettydoc, rvest, xml2
System Requirements
URL
See More
Suggests knitr, testthat, R.utils, spelling
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MACSQuantifyR_1.17.0.tar.gz
Windows Binary MACSQuantifyR_1.17.0.zip (64-bit only)
macOS Binary (x86_64) MACSQuantifyR_1.17.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/MACSQuantifyR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MACSQuantifyR
Bioc Package Browser https://code.bioconductor.org/browse/MACSQuantifyR/
Package Short Url https://bioconductor.org/packages/MACSQuantifyR/
Package Downloads Report Download Stats