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This is the development version of EBSeq; for the stable release version, see EBSeq.

An R package for gene and isoform differential expression analysis of RNA-seq data

Bioconductor version: Development (3.19)

Differential Expression analysis at both gene and isoform level using RNA-seq data

Author: Xiuyu Ma [cre, aut], Ning Leng [aut], Christina Kendziorski [ctb], Michael A. Newton [ctb]

Maintainer: Xiuyu Ma <watsonforfun at>

Citation (from within R, enter citation("EBSeq")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

EBSeq Vignette PDF R Script
Reference Manual PDF


biocViews DifferentialExpression, ImmunoOncology, MultipleComparison, RNASeq, Sequencing, Software, StatisticalMethod
Version 2.1.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License Artistic-2.0
Depends blockmodeling, gplots, testthat, R (>= 3.0.0)
Imports Rcpp (>= 0.12.11), RcppEigen (>=
System Requirements c++11
See More
Linking To Rcpp, RcppEigen, BH
Depends On Me EBSeqHMM, Oscope
Imports Me BatchQC, DEsubs, scDD, scDDboost
Suggests Me compcodeR
Links To Me
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Source Package EBSeq_2.1.0.tar.gz
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