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Director

This is the development version of Director; for the stable release version, see Director.

A dynamic visualization tool of multi-level data


Bioconductor version: Development (3.19)

Director is an R package designed to streamline the visualization of molecular effects in regulatory cascades. It utilizes the R package htmltools and a modified Sankey plugin of the JavaScript library D3 to provide a fast and easy, browser-enabled solution to discovering potentially interesting downstream effects of regulatory and/or co-expressed molecules. The diagrams are robust, interactive, and packaged as highly-portable HTML files that eliminate the need for third-party software to view. This enables a straightforward approach for scientists to interpret the data produced, and bioinformatics developers an alternative means to present relevant data.

Author: Katherine Icay [aut, cre]

Maintainer: Katherine Icay <kat.icay at gmail.com>

Citation (from within R, enter citation("Director")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Director")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Director")
Using Director PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Software, Visualization
Version 1.29.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License GPL-3 + file LICENSE
Depends R (>= 4.0)
Imports htmltools, utils, grDevices
System Requirements
URL https://github.com/kzouchka/Director
Bug Reports https://github.com/kzouchka/Director/issues
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Director_1.29.0.tar.gz
Windows Binary Director_1.29.0.zip
macOS Binary (x86_64) Director_1.29.0.tgz
macOS Binary (arm64) Director_1.29.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Director
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Director
Bioc Package Browser https://code.bioconductor.org/browse/Director/
Package Short Url https://bioconductor.org/packages/Director/
Package Downloads Report Download Stats