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This is the development version of DEGseq; for the stable release version, see DEGseq.

Identify Differentially Expressed Genes from RNA-seq data

Bioconductor version: Development (3.19)

DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.

Author: Likun Wang <wanglk at>, Xiaowo Wang <xwwang at> and Xuegong Zhang <zhangxg at>.

Maintainer: Likun Wang <wanglk at>

Citation (from within R, enter citation("DEGseq")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

DEGseq PDF R Script
Reference Manual PDF


biocViews DifferentialExpression, GeneExpression, ImmunoOncology, Preprocessing, RNASeq, Software
Version 1.57.1
In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)
License LGPL (>=2)
Depends R (>= 2.8.0), qvalue, methods
Imports graphics, grDevices, methods, stats, utils
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Source Package DEGseq_1.57.1.tar.gz
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