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BioCartaImage

This is the development version of BioCartaImage; for the stable release version, see BioCartaImage.

BioCarta Pathway Images


Bioconductor version: Development (3.19)

The core functionality of the package is to provide coordinates of genes on the BioCarta pathway images and to provide methods to add self-defined graphics to the genes of interest.

Author: Zuguang Gu [aut, cre]

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("BioCartaImage")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BioCartaImage")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioCartaImage")
Customize BioCarta Pathway Images HTML R Script
Reference Manual PDF

Details

biocViews BioCarta, Pathways, Software, Visualization
Version 1.1.0
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License MIT + file LICENSE
Depends R (>= 4.3.0)
Imports magick, grid, stats, grDevices, utils
System Requirements
URL https://github.com/jokergoo/BioCartaImage
Bug Reports https://github.com/jokergoo/BioCartaImage/issues
See More
Suggests testthat, knitr, BiocStyle, ragg
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BioCartaImage_1.1.0.tar.gz
Windows Binary BioCartaImage_1.1.0.zip
macOS Binary (x86_64) BioCartaImage_1.1.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/BioCartaImage
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BioCartaImage
Bioc Package Browser https://code.bioconductor.org/browse/BioCartaImage/
Package Short Url https://bioconductor.org/packages/BioCartaImage/
Package Downloads Report Download Stats