AnVILWorkflow
Run workflows implemented in Terra/AnVIL workspace
Bioconductor version: Release (3.19)
The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The main cloud-based genomics platform deported by the AnVIL project is Terra. The AnVILWorkflow package allows remote access to Terra implemented workflows, enabling end-user to utilize Terra/ AnVIL provided resources - such as data, workflows, and flexible/scalble computing resources - through the conventional R functions.
Author: Sehyun Oh [aut, cre] , Kai Gravel-Pucillo [aut]
Maintainer: Sehyun Oh <shbrief at gmail.com>
citation("AnVILWorkflow")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AnVILWorkflow")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AnVILWorkflow")
Quickstart: Example 1. RNAseq analysis using salmon | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Infrastructure, Software |
Version | 1.4.0 |
In Bioconductor since | BioC 3.17 (R-4.3) (1.5 years) |
License | Artistic-2.0 |
Depends | R (>= 4.2.0) |
Imports | utils, AnVIL, httr, methods, jsonlite, dplyr, tibble |
System Requirements | |
URL | |
Bug Reports | https://github.com/shbrief/AnVILWorkflow/issues |
See More
Suggests | knitr, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | AnVILWorkflow_1.4.0.tar.gz |
Windows Binary | AnVILWorkflow_1.4.0.zip |
macOS Binary (x86_64) | AnVILWorkflow_1.4.0.tgz |
macOS Binary (arm64) | AnVILWorkflow_1.4.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/AnVILWorkflow |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AnVILWorkflow |
Bioc Package Browser | https://code.bioconductor.org/browse/AnVILWorkflow/ |
Package Short Url | https://bioconductor.org/packages/AnVILWorkflow/ |
Package Downloads Report | Download Stats |