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ABSSeq

This is the development version of ABSSeq; for the stable release version, see ABSSeq.

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences


Bioconductor version: Development (3.19)

Inferring differential expression genes by absolute counts difference between two groups, utilizing Negative binomial distribution and moderating fold-change according to heterogeneity of dispersion across expression level.

Author: Wentao Yang

Maintainer: Wentao Yang <wyang at zoologie.uni-kiel.de>

Citation (from within R, enter citation("ABSSeq")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ABSSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ABSSeq")
ABSSeq PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, Software
Version 1.57.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License GPL (>= 3)
Depends R (>= 2.10), methods
Imports locfit, limma
System Requirements
URL
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Suggests edgeR
Linking To
Enhances
Depends On Me
Imports Me metaseqR2
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ABSSeq_1.57.0.tar.gz
Windows Binary ABSSeq_1.57.0.zip
macOS Binary (x86_64) ABSSeq_1.57.0.tgz
macOS Binary (arm64) ABSSeq_1.57.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ABSSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ABSSeq
Bioc Package Browser https://code.bioconductor.org/browse/ABSSeq/
Package Short Url https://bioconductor.org/packages/ABSSeq/
Package Downloads Report Download Stats