smokingMouse
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see smokingMouse.
Provides access to smokingMouse project data
Bioconductor version: 3.18
This is an ExperimentHub package that provides access to the data at the gene, exon, transcript and junction level used in the analyses of the smokingMouse project. See https://github.com/LieberInstitute/smokingMouse_Indirects. This datasets contain the expression counts of genes, transcripts, exons and exon-exon junctions across 208 mice samples from pup and adult brains and adult blood. They also contain relevant information of these samples and features, such as conditions, QC metrics and if they were used after filtering steps and also if the features were differently expressed in the different experiments.
Author: Daianna Gonzalez-Padilla [aut, cre] 
Maintainer: Daianna Gonzalez-Padilla <glezdaianna at gmail.com>
citation("smokingMouse")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("smokingMouse")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("smokingMouse")| Introduction to smokingMouse | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, Mus_musculus_Data, RNASeqData |
| Version | 1.0.0 |
| License | Artistic-2.0 |
| Depends | |
| Imports | |
| System Requirements | |
| URL | https://github.com/LieberInstitute/smokingMouse |
| Bug Reports | https://support.bioconductor.org/t/smokingMouse |
See More
| Suggests | ExperimentHub, AnnotationHubData, BiocStyle, covr, ExperimentHubData, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | smokingMouse_1.0.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/smokingMouse |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/smokingMouse |
| Package Short Url | https://bioconductor.org/packages/smokingMouse/ |
| Package Downloads Report | Download Stats |