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raerdata

A collection of datasets for use with raer package


Bioconductor version: Release (3.18)

raerdata is an ExperimentHub package that provides a collection of files useful for demostrating functionality in the raer package. Datasets include 10x genomics scRNA-seq, bulk RNA-seq, and paired whole-genome and RNA-seq data. Additionally databases of human and mouse RNA editing sites are provided.

Author: Kent Riemondy [aut, cre]

Maintainer: Kent Riemondy <kent.riemondy at cuanschutz.edu>

Citation (from within R, enter citation("raerdata")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("raerdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("raerdata")
raerdata HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, PackageTypeData, RNASeqData, SequencingData, SingleCellData
Version 1.0.0
License MIT + file LICENSE
Depends
Imports ExperimentHub, Rsamtools, BiocGenerics, rtracklayer, SingleCellExperiment
System Requirements
URL https://github.com/rnabioco/raerdata
Bug Reports https://github.com/rnabioco/raerdata/issues
See More
Suggests rmarkdown, knitr, BiocStyle, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me raer
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package raerdata_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/raerdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/raerdata
Package Short Url https://bioconductor.org/packages/raerdata/
Package Downloads Report Download Stats