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Cell type annotation for unannotated single-cell RNA-Seq data

Bioconductor version: Release (3.18)

scTGIF connects the cells and the related gene functions without cell type label.

Author: Koki Tsuyuzaki [aut, cre]

Maintainer: Koki Tsuyuzaki <k.t.the-answer at>

Citation (from within R, enter citation("scTGIF")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

scTGIF HTML R Script
Reference Manual PDF


biocViews DimensionReduction, GeneExpression, QualityControl, SingleCell, Software
Version 1.16.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License Artistic-2.0
Depends R (>= 3.6.0)
Imports GSEABase, Biobase, SingleCellExperiment, BiocStyle, plotly, tagcloud, rmarkdown, Rcpp, grDevices, graphics, utils, knitr, S4Vectors, SummarizedExperiment, RColorBrewer, nnTensor, methods, scales, msigdbr, schex, tibble, ggplot2, igraph
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Follow Installation instructions to use this package in your R session.

Source Package scTGIF_1.16.0.tar.gz
Windows Binary (64-bit only)
macOS Binary (x86_64) scTGIF_1.16.0.tgz
macOS Binary (arm64) scTGIF_1.16.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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