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A single-cell RNAseq Shiny app-package

Bioconductor version: Release (3.18)

scRNAseqApp is a Shiny app package that allows users to visualize single cell data interactively. It was modified from ShinyCell and repackaged to a tool to show multiple data. It can visulize the data with multiple information side by side.

Author: Jianhong Ou [aut, cre]

Maintainer: Jianhong Ou <jianhong.ou at>

Citation (from within R, enter citation("scRNAseqApp")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

scRNAseqApp Vignette HTML R Script
Reference Manual PDF


biocViews RNASeq, SingleCell, Software, Visualization
Version 1.2.2
In Bioconductor since BioC 3.17 (R-4.3) (1 year)
License GPL-3
Depends R (>= 4.3.0)
Imports bibtex, bslib, circlize, ComplexHeatmap, data.table, DT, GenomicRanges, GenomeInfoDb, ggdendro, ggforce, ggplot2, ggrepel, ggridges, grDevices, grid, gridExtra, hdf5r, htmltools, IRanges, jsonlite, magrittr, methods, patchwork, plotly, RColorBrewer, RefManageR, Rsamtools, rtracklayer, S4Vectors, scales, scrypt, Seurat, SeuratObject, shiny, shinyhelper, shinymanager, slingshot, SingleCellExperiment, sortable, stats, tools, xfun, xml2, utils
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Suggests rmarkdown, knitr, testthat, BiocStyle
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Enhances celldex, future, SingleR, SummarizedExperiment, tricycle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scRNAseqApp_1.2.2.tar.gz
Windows Binary
macOS Binary (x86_64) scRNAseqApp_1.2.2.tgz
macOS Binary (arm64) scRNAseqApp_1.2.2.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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Old Source Packages for BioC 3.18 Source Archive