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Identify differential APA usage from RNA-seq alignments

Bioconductor version: Release (3.18)

Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.

Author: Elena Grassi

Maintainer: Elena Grassi <grassi.e at gmail.com>

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Identify differential APA usage from RNA-seq alignments PDF R Script
Reference Manual PDF


biocViews HighThroughputSequencing, RNAseq, Sequencing, Software, Transcription
Version 1.38.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License GPL-3
Depends R (>= 3.0.1)
Imports methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment, GenomicAlignments(>= 0.99.4), rtracklayer, GenomeInfoDb
System Requirements
URL https://github.com/vodkatad/roar/
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Suggests RNAseqData.HNRNPC.bam.chr14, testthat
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Source Package roar_1.38.0.tar.gz
Windows Binary roar_1.38.0.zip (64-bit only)
macOS Binary (x86_64) roar_1.38.0.tgz
macOS Binary (arm64) roar_1.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/roar
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/roar
Bioc Package Browser https://code.bioconductor.org/browse/roar/
Package Short Url https://bioconductor.org/packages/roar/
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