imageHTS
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see imageHTS.
Analysis of high-throughput microscopy-based screens
Bioconductor version: 3.18
imageHTS is an R package dedicated to the analysis of high-throughput microscopy-based screens. The package provides a modular and extensible framework to segment cells, extract quantitative cell features, predict cell types and browse screen data through web interfaces. Designed to operate in distributed environments, imageHTS provides a standardized access to remote data and facilitates the dissemination of high-throughput microscopy-based datasets.
Author: Gregoire Pau, Xian Zhang, Michael Boutros, Wolfgang Huber
Maintainer: Joseph Barry <joseph.barry at embl.de>
citation("imageHTS")
):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("imageHTS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Reference Manual |
Details
biocViews | CellBasedAssays, ImmunoOncology, Preprocessing, Software, Visualization |
Version | 1.52.0 |
In Bioconductor since | BioC 2.7 (R-2.12) (13.5 years) |
License | LGPL-2.1 |
Depends | R (>= 2.9.0), EBImage(>= 4.3.12), cellHTS2(>= 2.10.0) |
Imports | tools, Biobase, hwriter, methods, vsn, stats, utils, e1071 |
System Requirements | |
URL |
See More
Suggests | BiocStyle, MASS |
Linking To | |
Enhances | |
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Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/imageHTS |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/imageHTS |
Package Short Url | https://bioconductor.org/packages/imageHTS/ |
Package Downloads Report | Download Stats |