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eds

eds: Low-level reader for Alevin EDS format


Bioconductor version: Release (3.18)

This packages provides a single function, readEDS. This is a low-level utility for reading in Alevin EDS format into R. This function is not designed for end-users but instead the package is predominantly for simplifying package dependency graph for other Bioconductor packages.

Author: Avi Srivastava [aut, cre], Michael Love [aut, ctb]

Maintainer: Avi Srivastava <asrivastava at cs.stonybrook.edu>

Citation (from within R, enter citation("eds")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("eds")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("eds")
eds: Low-level reader function for Alevin EDS format HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GeneExpression, RNASeq, Sequencing, SingleCell, Software
Version 1.4.0
In Bioconductor since BioC 3.16 (R-4.2) (1.5 years)
License GPL-2
Depends Matrix
Imports Rcpp
System Requirements C++11
URL https://github.com/mikelove/eds
See More
Suggests knitr, tximportData, testthat (>= 3.0.0)
Linking To Rcpp
Enhances
Depends On Me
Imports Me singleCellTK
Suggests Me tximport
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package eds_1.4.0.tar.gz
Windows Binary eds_1.4.0.zip (64-bit only)
macOS Binary (x86_64) eds_1.4.0.tgz
macOS Binary (arm64) eds_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/eds
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/eds
Bioc Package Browser https://code.bioconductor.org/browse/eds/
Package Short Url https://bioconductor.org/packages/eds/
Package Downloads Report Download Stats