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bluster

Clustering Algorithms for Bioconductor


Bioconductor version: Release (3.18)

Wraps common clustering algorithms in an easily extended S4 framework. Backends are implemented for hierarchical, k-means and graph-based clustering. Several utilities are also provided to compare and evaluate clustering results.

Author: Aaron Lun [aut, cre], Stephanie Hicks [ctb], Basil Courbayre [ctb], Tuomas Borman [ctb], Leo Lahti [ctb]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("bluster")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bluster")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bluster")
1. Clustering algorithms HTML R Script
2. Clustering diagnostics HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Clustering, GeneExpression, ImmunoOncology, SingleCell, Software, Transcriptomics
Version 1.12.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License GPL-3
Depends
Imports stats, methods, utils, cluster, Matrix, Rcpp, igraph, S4Vectors, BiocParallel, BiocNeighbors
System Requirements C++11
URL
See More
Suggests knitr, rmarkdown, testthat, BiocStyle, dynamicTreeCut, scRNAseq, scuttle, scater, scran, pheatmap, viridis, mbkmeans, kohonen, apcluster, DirichletMultinomial, vegan, fastcluster
Linking To Rcpp
Enhances
Depends On Me OSCA.advanced, OSCA.basic, OSCA.intro, OSCA.multisample, OSCA.workflows, SingleRBook
Imports Me mia, scDblFinder, scran, Voyager
Suggests Me batchelor, ChromSCape, concordexR, dittoSeq, mbkmeans, miaViz, mumosa
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bluster_1.12.0.tar.gz
Windows Binary bluster_1.12.0.zip
macOS Binary (x86_64) bluster_1.12.0.tgz
macOS Binary (arm64) bluster_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/bluster
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bluster
Bioc Package Browser https://code.bioconductor.org/browse/bluster/
Package Short Url https://bioconductor.org/packages/bluster/
Package Downloads Report Download Stats