Welcome to the new bioconductor.org!

RedeR

Interactive visualization and manipulation of nested networks


Bioconductor version: Release (3.18)

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of nested networks.

Author: Mauro Castro, Xin Wang, Florian Markowetz

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>

Citation (from within R, enter citation("RedeR")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RedeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RedeR")
RedeR: hierarchical networks HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GUI, GraphAndNetwork, Network, NetworkEnrichment, NetworkInference, Software, SystemsBiology
Version 2.6.0
In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)
License GPL (>= 3)
Depends R (>= 4.0), methods
Imports igraph
System Requirements Java Runtime Environment (Java>= 11)
URL http://genomebiology.com/2012/13/4/R29
See More
Suggests BiocStyle, knitr, rmarkdown, markdown, TreeAndLeaf
Linking To
Enhances
Depends On Me Fletcher2013b
Imports Me PANR, RTN, transcriptogramer, TreeAndLeaf
Suggests Me RGraphSpace
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RedeR_2.6.0.tar.gz
Windows Binary RedeR_2.6.0.zip (64-bit only)
macOS Binary (x86_64) RedeR_2.6.0.tgz
macOS Binary (arm64) RedeR_2.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RedeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RedeR
Bioc Package Browser https://code.bioconductor.org/browse/RedeR/
Package Short Url https://bioconductor.org/packages/RedeR/
Package Downloads Report Download Stats