This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see RITAN.

Rapid Integration of Term Annotation and Network resources

Bioconductor version: 3.18

Tools for comprehensive gene set enrichment and extraction of multi-resource high confidence subnetworks. RITAN facilitates bioinformatic tasks for enabling network biology research.

Author: Michael Zimmermann [aut, cre]

Maintainer: Michael Zimmermann <mtzimmermann at mcw.edu>

Citation (from within R, enter citation("RITAN")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Choosing Resources HTML R Script
Enrichment Vignette HTML R Script
Multi-Tissue Analysis HTML R Script
Network Biology Vignette HTML R Script
Relationships Among Resources HTML R Script
Reference Manual PDF


biocViews FunctionalGenomics, GeneSetEnrichment, GraphAndNetwork, Network, NetworkEnrichment, NetworkInference, QualityControl, Software
Version 1.26.0
In Bioconductor since BioC 3.5 (R-3.4) (7 years)
License file LICENSE
Depends R (>= 4.0)
Imports graphics, methods, stats, utils, grid, gridExtra, reshape2, gplots, ggplot2, plotrix, RColorBrewer, STRINGdb, MCL, linkcomm, dynamicTreeCut, gsubfn, hash, png, sqldf, igraph, BgeeDB, knitr, RITANdata, GenomicFeatures, ensembldb, AnnotationFilter, EnsDb.Hsapiens.v86
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Suggests rmarkdown, BgeeDB
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RITAN_1.26.0.tar.gz
Windows Binary RITAN_1.26.0.zip
macOS Binary (x86_64) RITAN_1.26.0.tgz
macOS Binary (arm64) RITAN_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RITAN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RITAN
Bioc Package Browser https://code.bioconductor.org/browse/RITAN/
Package Short Url https://bioconductor.org/packages/RITAN/
Package Downloads Report Download Stats