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RDRToolbox

A package for nonlinear dimension reduction with Isomap and LLE.


Bioconductor version: Release (3.18)

A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.

Author: Christoph Bartenhagen

Maintainer: Christoph Bartenhagen <c.bartenhagen at uni-koeln.de>

Citation (from within R, enter citation("RDRToolbox")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RDRToolbox")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RDRToolbox")
A package for nonlinear dimension reduction with Isomap and LLE. PDF R Script
Reference Manual PDF

Details

biocViews Clustering, DimensionReduction, FeatureExtraction, Microarray, Software, Visualization
Version 1.52.0
In Bioconductor since BioC 2.7 (R-2.12) (13.5 years)
License GPL (>= 2)
Depends R (>= 2.9.0)
Imports graphics, grDevices, methods, stats, MASS, rgl
System Requirements
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RDRToolbox_1.52.0.tar.gz
Windows Binary RDRToolbox_1.52.0.zip
macOS Binary (x86_64) RDRToolbox_1.52.0.tgz
macOS Binary (arm64) RDRToolbox_1.52.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RDRToolbox
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RDRToolbox
Bioc Package Browser https://code.bioconductor.org/browse/RDRToolbox/
Package Short Url https://bioconductor.org/packages/RDRToolbox/
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