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NanoStringNCTools

NanoString nCounter Tools


Bioconductor version: Release (3.18)

Tools for NanoString Technologies nCounter Technology. Provides support for reading RCC files into an ExpressionSet derived object. Also includes methods for QC and normalizaztion of NanoString data.

Author: Patrick Aboyoun [aut], Nicole Ortogero [cre], Zhi Yang [ctb]

Maintainer: Nicole Ortogero <nortogero at nanostring.com>

Citation (from within R, enter citation("NanoStringNCTools")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("NanoStringNCTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NanoStringNCTools")
Introduction to the NanoStringRCCSet Class HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews CellBasedAssays, DataImport, GeneExpression, ProprietaryPlatforms, Proteomics, RNASeq, Software, Transcription, Transcriptomics, mRNAMicroarray
Version 1.10.0
In Bioconductor since BioC 3.13 (R-4.1) (3 years)
License MIT
Depends R (>= 3.6), Biobase, S4Vectors, ggplot2
Imports BiocGenerics, Biostrings, ggbeeswarm, ggiraph, ggthemes, grDevices, IRanges, methods, pheatmap, RColorBrewer, stats, utils
System Requirements
URL
See More
Suggests biovizBase, ggbio, RUnit, rmarkdown, knitr, qpdf
Linking To
Enhances
Depends On Me GeomxTools, GeoMxWorkflows
Imports Me GeoDiff
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package NanoStringNCTools_1.10.0.tar.gz
Windows Binary NanoStringNCTools_1.10.0.zip (64-bit only)
macOS Binary (x86_64) NanoStringNCTools_1.10.0.tgz
macOS Binary (arm64) NanoStringNCTools_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/NanoStringNCTools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/NanoStringNCTools
Bioc Package Browser https://code.bioconductor.org/browse/NanoStringNCTools/
Package Short Url https://bioconductor.org/packages/NanoStringNCTools/
Package Downloads Report Download Stats