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InteractiveComplexHeatmap

Make Interactive Complex Heatmaps


Bioconductor version: Release (3.18)

This package can easily make heatmaps which are produced by the ComplexHeatmap package into interactive applications. It provides two types of interactivities: 1. on the interactive graphics device, and 2. on a Shiny app. It also provides functions for integrating the interactive heatmap widgets for more complex Shiny app development.

Author: Zuguang Gu [aut, cre]

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("InteractiveComplexHeatmap")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("InteractiveComplexHeatmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("InteractiveComplexHeatmap")
1. How to visualize heatmaps interactively HTML R Script
2. How interactive complex heatmap is implemented HTML R Script
3. Functions for Shiny app development HTML R Script
4. Decorations on heatmaps HTML R Script
5. Interactivate heatmaps indirectly generated by pheatmap(), heatmap.2() and heatmap() HTML R Script
6. A Shiny app for visualizing DESeq2 results HTML R Script
7. Implement interactive heatmap from scratch HTML R Script
8. Share interactive heatmaps to collaborators HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Sequencing, Software, Visualization
Version 1.10.0
In Bioconductor since BioC 3.13 (R-4.1) (3 years)
License MIT + file LICENSE
Depends R (>= 4.0.0), ComplexHeatmap(>= 2.11.0)
Imports grDevices, stats, shiny, grid, GetoptLong, S4Vectors(>= 0.26.1), digest, IRanges, kableExtra (>= 1.3.1), utils, svglite, htmltools, clisymbols, jsonlite, RColorBrewer, fontawesome
System Requirements
URL https://github.com/jokergoo/InteractiveComplexHeatmap
Bug Reports https://github.com/jokergoo/InteractiveComplexHeatmap/issues
See More
Suggests knitr, rmarkdown, testthat, EnrichedHeatmap, GenomicRanges, data.table, circlize, GenomicFeatures, tidyverse, tidyHeatmap, cluster, org.Hs.eg.db, simplifyEnrichment, GO.db, SC3, GOexpress, SingleCellExperiment, scater, gplots, pheatmap, airway, DESeq2, DT, cola, BiocManager, gridtext, HilbertCurve(>= 1.21.1), shinydashboard, SummarizedExperiment, pkgndep, ks
Linking To
Enhances
Depends On Me
Imports Me mineSweepR
Suggests Me simona, simplifyEnrichment
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package InteractiveComplexHeatmap_1.10.0.tar.gz
Windows Binary InteractiveComplexHeatmap_1.10.0.zip (64-bit only)
macOS Binary (x86_64) InteractiveComplexHeatmap_1.10.0.tgz
macOS Binary (arm64) InteractiveComplexHeatmap_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/InteractiveComplexHeatmap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/InteractiveComplexHeatmap
Bioc Package Browser https://code.bioconductor.org/browse/InteractiveComplexHeatmap/
Package Short Url https://bioconductor.org/packages/InteractiveComplexHeatmap/
Package Downloads Report Download Stats