Registration and Call for Abstracts Open for Bioc2024


This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see DeepBlueR.


Bioconductor version: Release (3.18)

Accessing the DeepBlue Epigenetics Data Server through R.

Author: Felipe Albrecht, Markus List

Maintainer: Felipe Albrecht <felipe.albrecht at>, Markus List <markus.list at>, Quirin Manz <quirin.manz at>

Citation (from within R, enter citation("DeepBlueR")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

The DeepBlue epigenomic data server - R package HTML R Script
Reference Manual PDF


biocViews Annotation, CpGIsland, DNAMethylation, DataImport, DataRepresentation, Epigenetics, GeneRegulation, GenomeAnnotation, ImmunoOncology, Preprocessing, Software, ThirdPartyClient
Version 1.27.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License GPL (>=2.0)
Depends R (>= 3.3), XML, RCurl
Imports GenomicRanges, data.table, stringr, diffr, dplyr, methods, rjson, utils, R.utils, foreach, withr, rtracklayer, GenomeInfoDb, settings, filehash
System Requirements
See More
Suggests knitr, rmarkdown, LOLA, Gviz, gplots, ggplot2, tidyr, RColorBrewer, matrixStats
Linking To
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DeepBlueR_1.27.0.tar.gz
Windows Binary
macOS Binary (x86_64) DeepBlueR_1.27.0.tgz
macOS Binary (arm64)
Source Repository git clone
Source Repository (Developer Access) git clone
Bioc Package Browser
Package Short Url
Package Downloads Report Download Stats