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High-throughput prediction of DNA shape features

Bioconductor version: Release (3.18)

DNAhapeR is an R/BioConductor package for ultra-fast, high-throughput predictions of DNA shape features. The package allows to predict, visualize and encode DNA shape features for statistical learning.

Author: Tsu-Pei Chiu and Federico Comoglio

Maintainer: Tsu-Pei Chiu <tsupeich at>

Citation (from within R, enter citation("DNAshapeR")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

DNAshapeR HTML R Script
Reference Manual PDF


biocViews DNA3DStructure, Software, StructuralPrediction
Version 1.30.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL-2
Depends R (>= 3.4), GenomicRanges
Imports Rcpp (>= 0.12.1), Biostrings, fields
System Requirements
See More
Suggests AnnotationHub, knitr, rmarkdown, testthat, BSgenome.Scerevisiae.UCSC.sacCer3, BSgenome.Hsapiens.UCSC.hg19, caret
Linking To Rcpp
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Follow Installation instructions to use this package in your R session.

Source Package DNAshapeR_1.30.0.tar.gz
Windows Binary
macOS Binary (x86_64) DNAshapeR_1.30.0.tgz
macOS Binary (arm64) DNAshapeR_1.30.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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