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CAMERA

Collection of annotation related methods for mass spectrometry data


Bioconductor version: Release (3.18)

Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments

Author: Carsten Kuhl, Ralf Tautenhahn, Hendrik Treutler, Steffen Neumann {ckuhl|htreutle|sneumann}@ipb-halle.de, rtautenh@scripps.edu

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>

Citation (from within R, enter citation("CAMERA")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CAMERA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CAMERA")
Atom count expectations with compoundQuantiles PDF
Isotope pattern validation with CAMERA PDF
Molecule Identification with CAMERA PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ImmunoOncology, MassSpectrometry, Metabolomics, Software
Version 1.58.0
In Bioconductor since BioC 2.4 (R-2.9) (15 years)
License GPL (>= 2)
Depends R (>= 3.5.0), methods, Biobase, xcms(>= 1.13.5)
Imports methods, xcms, RBGL, graph, graphics, grDevices, stats, utils, Hmisc, igraph
System Requirements
URL http://msbi.ipb-halle.de/msbi/CAMERA/
Bug Reports https://github.com/sneumann/CAMERA/issues/new
See More
Suggests faahKO, RUnit, BiocGenerics
Linking To
Enhances Rmpi, snow
Depends On Me flagme, IPO, LOBSTAHS, MAIT, metaMS, PtH2O2lipids
Imports Me
Suggests Me cliqueMS, msPurity, mtbls2, RMassBank
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CAMERA_1.58.0.tar.gz
Windows Binary CAMERA_1.58.0.zip
macOS Binary (x86_64) CAMERA_1.58.0.tgz
macOS Binary (arm64) CAMERA_1.58.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CAMERA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CAMERA
Bioc Package Browser https://code.bioconductor.org/browse/CAMERA/
Package Short Url https://bioconductor.org/packages/CAMERA/
Package Downloads Report Download Stats