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BiocCheck

Bioconductor-specific package checks


Bioconductor version: Release (3.18)

BiocCheck guides maintainers through Bioconductor best practicies. It runs Bioconductor-specific package checks by searching through package code, examples, and vignettes. Maintainers are required to address all errors, warnings, and most notes produced.

Author: Bioconductor Package Maintainer [aut], Lori Shepherd [aut], Daniel von Twisk [ctb], Kevin Rue [ctb], Marcel Ramos [aut, cre] , Leonardo Collado-Torres [ctb], Federico Marini [ctb]

Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>

Citation (from within R, enter citation("BiocCheck")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocCheck")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocCheck")
BiocCheck: Ensuring Bioconductor package guidelines HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software
Version 1.38.2
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License Artistic-2.0
Depends R (>= 4.3.0)
Imports BiocBaseUtils, BiocFileCache, BiocManager, biocViews(>= 1.33.7), callr, codetools, graph, httr2, knitr, methods, rvest, stringdist, tools, utils
System Requirements
URL https://github.com/Bioconductor/BiocCheck
Bug Reports https://github.com/Bioconductor/BiocCheck/issues
See More
Suggests RUnit, BiocGenerics, Biobase, jsonlite, rmarkdown, downloader, devtools (>= 1.4.1), usethis, BiocStyle, GenomicRanges, gert
Linking To
Enhances
Depends On Me
Imports Me AnnotationHubData, gDRstyle
Suggests Me GEOfastq, HMP16SData, HMP2Data, packFinder, preciseTAD, scpdata, SpectralTAD
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocCheck_1.38.2.tar.gz
Windows Binary BiocCheck_1.38.2.zip
macOS Binary (x86_64) BiocCheck_1.38.2.tgz
macOS Binary (arm64) BiocCheck_1.38.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/BiocCheck
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocCheck
Bioc Package Browser https://code.bioconductor.org/browse/BiocCheck/
Package Short Url https://bioconductor.org/packages/BiocCheck/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.18 Source Archive