DOI: 10.18129/B9.bioc.wateRmelon  

Illumina 450 and EPIC methylation array normalization and metrics

Bioconductor version: Release (3.17)

15 flavours of betas and three performance metrics, with methods for objects produced by methylumi and minfi packages.

Author: Leo C Schalkwyk [cre, aut], Tyler J Gorrie-Stone [aut], Ruth Pidsley [aut], Chloe CY Wong [aut], Nizar Touleimat [ctb], Matthieu Defrance [ctb], Andrew Teschendorff [ctb], Jovana Maksimovic [ctb], Louis Y El Khoury [ctb], Yucheng Wang [ctb]

Maintainer: Leo C Schalkwyk <lschal at essex.ac.uk>

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biocViews DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 2.6.0
In Bioconductor since BioC 2.12 (R-3.0) (10.5 years)
License GPL-3
Depends R (>= 3.5.0), Biobase, limma, methods, matrixStats, methylumi, lumi, ROC, IlluminaHumanMethylation450kanno.ilmn12.hg19, illuminaio
Imports Biobase
Suggests RPMM, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, BiocStyle, knitr, rmarkdown, IlluminaHumanMethylationEPICmanifest, irlba, FlowSorted.Blood.EPIC, FlowSorted.Blood.450k, preprocessCore
Enhances minfi
Depends On Me bigmelon, skewr
Imports Me ChAMP, MEAT
Suggests Me RnBeads
Links To Me
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Source Package wateRmelon_2.6.0.tar.gz
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Bioc Package Browser https://code.bioconductor.org/browse/wateRmelon/
Package Short Url https://bioconductor.org/packages/wateRmelon/
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