DOI: 10.18129/B9.bioc.scds    

This is the development version of scds; for the stable release version, see scds.

In-Silico Annotation of Doublets for Single Cell RNA Sequencing Data

Bioconductor version: Development (3.17)

In single cell RNA sequencing (scRNA-seq) data combinations of cells are sometimes considered a single cell (doublets). The scds package provides methods to annotate doublets in scRNA-seq data computationally.

Author: Dennis Kostka [aut, cre], Bais Abha [aut]

Maintainer: Dennis Kostka <kostka at>

Citation (from within R, enter citation("scds")):


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biocViews Classification, GeneExpression, Preprocessing, QualityControl, RNASeq, Sequencing, SingleCell, Software, Transcriptomics
Version 1.15.0
In Bioconductor since BioC 3.9 (R-3.6) (3.5 years)
License MIT + file LICENSE
Depends R (>= 3.6.0)
Imports Matrix, S4Vectors, SingleCellExperiment, SummarizedExperiment, xgboost, methods, stats, dplyr, pROC
Suggests BiocStyle, knitr, rsvd, Rtsne, scater, cowplot, rmarkdown
Depends On Me
Imports Me singleCellTK
Suggests Me ExperimentSubset, muscData
Links To Me
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